Association for Biology Laboratory Education

Visualizing the evolution of a varied population using Avida-ED
    

Kimberly J. Bolyard and Moshe Khurgel

Advances in Biology Laboratory Education, 2025, Volume 45

https://doi.org/10.37590/able.v45.abs44

Supplemental Materials: https://doi.org/10.37590/able.v45.sup44

Poster file: https://doi.org/10.37590/able.v45.poster44

Abstract

Evolutionary timescale is an obvious barrier for inquiry-based learning of evolution. We present an exercise for senior undergraduate biology majors to enable them to formulate and test their own hypotheses of evolutionary changes in real time. Students use Avida-ED (avida-ed.msu.edu) evolution modeling software to design and execute experiments to visualize evolutionary changes in in silico organisms over thousands of generations in a matter of minutes. The exercise guides students from exploring the impact of mutations on phenotypes to testing how mutations can affect the outcome of competitive interactions. Thereafter, students are prompted to design their own experiment to test the evolution of a population. Learning outcomes include describing how characteristics of a population change over time and how population changes are related to characteristics of individuals, as well as how changes in the environment affect the fitness of different phenotypes. We have also created a rubric for evaluating student submissions. The exercise relates to a wide variety of laboratory topics such as antibiotic resistance in bacteria, ecological interactions among organisms, and diversity of organisms. While we use one-hour blocks of time over two different weeks, the exercise is flexible in terms of how it can be integrated into laboratory periods. The exercise stimulates critical and creative thinking in students, and enables student-driven inquiry into evolution, a core concept in biology.

Keywords:  Experimental evolution, mutation, genotype, phenotype, fitness, student-driven, interdisciplinary

University of Maryland (2024)